Mar Azul
Av. alsacio northia. rooms are clean and have fan, private bathroom with hotshower and television. price $20 pppn.
Orca Hotel
The Orca Hotel is clean, comfortable, and quite popular with tourists so long as you're not on a tight budget. It's located right on the beach, you will often find a friendly sea lion napping on the front porch.
San Francisco
Hotel San Francisco, Av Chales Darwin, This hotel is conveniently located at the Malecón and is a cheap option if cleanliness isn't your highest priority. Uninviting rooms have television, fan and private bathroom with cold shower. Price $10-15 pp.
Albatros
Hotel Albatros, right next to hotel San Francisco is about the same price, but the conditions are worse.